cli-guide: Command line guide

Learning the command line is useful if you want to do things at scale or use anything outside of pre-built tools

Code syntax highlighting works built-in (e.g. snippet to run AlphaFold)

python3 docker/run_docker.py \
  --fasta_paths=your_protein.fasta \
  --max_template_date=2022-01-01 \
  --data_dir=$DOWNLOAD_DIR \
  --output_dir=/home/user/absolute_path_to_the_output_dir

Here’s generating and RSA-key (pilfered from jameslingford.com) Among his many excellent tutorials are his guide to running ColabFold on your uni’s local cluster using SSH.

ssh-keygen -b 4096 -t rsa -C "Add your own personal comment between quotes"

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